species:   Rhsol
pid:       PID0608
parent:    Rhi-milR-98
paralog:   
locus:     KB317769.1:50922-51033
matures:   ['UAAGGGCAAUGGCAAGCUAUGUA', 'AGUAGUUACUGGGCUUAAGGCCCUUGUACA']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317769.1:50922-51033

6 out of bounds
3 alignments
2 proper strand
1 stranded perfect matches

  ***************************                                     **********************************            
UGUAAGGGCAAUGGCAAGCUAUGUAAGUACAACAAGGAAGCUGCUUAAUGCAGUGUGGACUGGUGGGACUUUAGUAGUUACUGGGCUUAAGGCCCUUGUACAGUGUGGGAUG
(((((((((...(((.((((((..((((...((.((...(((((.....))))).....)).))...))))..)))))).....)))....)))))..))))..........
--UAAGGGCAAUGGCAAGCUAUGUA--------------------------------------------------------------------------------------- l=23 a=0 c
------------------------------------------------------------------------AGUAGUUACUGGGCUUAAGGCCCUUGUACA---------- l=30 a=0 c*
-----------------------------------------UGCUUAAUGCAGUGUGGACUGG------------------------------------------------- l=22 a=1 ma
------------------------------------------------------------------------AGUAGUUACUGGGCUUAAGGCCCUUGUACA---------- l=30 a=0 ma*

UGUAAGGGCAAUGGCAAGaUAUG----------------------------------------------------------------------------------------- l=23 a=1 
-----------------------------------------UGCUUAAUGCAGUGUGGACUGG------------------------------------------------- l=22 a=1 (ma)

mb-00010
ax-1001011
ku-01
ss-110110101000
fn-001
